Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs56404434 chr16:27808124 T/C 1.04E-5 133 46.53 33.55 17.27 KM Plot
TGCT rs56406502 chr10:27558316 A/G 6.98E-7 132 42.18 46.3 20.6 KM Plot
TGCT rs56413502 chr4:154721784 T/A 9.98E-5 132 40.57 49.93 50.9 KM Plot
TGCT rs564685 chr13:21846879 A/G 5.93E-7 132 46.3 36.7 14.42 KM Plot
TGCT rs566364 chr13:21837583 T/C 5.93E-7 132 46.3 36.7 14.42 KM Plot
TGCT rs56665180 chr20:58153881 C/T 4.65E-13 129 42.1 76.63 17.1 KM Plot
TGCT rs567166 chr13:21837519 T/C 5.93E-7 132 46.3 36.7 14.42 KM Plot
TGCT rs56780658 chr5:1797410 CT/C 4.04E-7 133 42.27 45.83 20.6 KM Plot
TGCT rs56789266 chr2:29494555 C/T 0 134 42.27 25.02 0.57 KM Plot
TGCT rs56840835 chr2:29494668 T/C 0 134 42.27 25.02 0.57 KM Plot
TGCT rs56902797 chr6:41349029 G/A 1.36E-6 129 45.1 25.18 11.53 KM Plot
TGCT rs56934076 chr2:54789016 T/TAA 7.54E-5 130 46.3 41.97 22.42 KM Plot
TGCT rs57204212 chr6:28335007 C/A 0 134 45.83 29.65 0.57 KM Plot
TGCT rs57290849 chr6:42540230 A/AT 3.69E-9 131 19.33 51.67 37.95 KM Plot
TGCT rs57339942 chr14:71083307 T/A 1.69E-5 131 39.38 66.9 21.43 KM Plot